diff --git a/.changeset/merge-worktree-task-tools.md b/.changeset/merge-worktree-task-tools.md
new file mode 100644
index 0000000000..63e1c64f41
--- /dev/null
+++ b/.changeset/merge-worktree-task-tools.md
@@ -0,0 +1,3 @@
+"@runfusion/fusion": patch
+
+Fix Fusion task tools from AI merge temp worktrees so merger agents can fetch task details without trying to bootstrap a nested project.
diff --git a/packages/cli/src/__tests__/extension-task-tools.test.ts b/packages/cli/src/__tests__/extension-task-tools.test.ts
index abcfc92788..7debb9de66 100644
--- a/packages/cli/src/__tests__/extension-task-tools.test.ts
+++ b/packages/cli/src/__tests__/extension-task-tools.test.ts
@@ -1,9 +1,10 @@
 import { describe, expect, it, vi, beforeEach, afterEach } from "vitest";
 
 vi.setConfig({ testTimeout: 20000, hookTimeout: 20000 });
-import { mkdtemp, mkdir, rm } from "node:fs/promises";
+import { mkdtemp, mkdir, rm, writeFile } from "node:fs/promises";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
+import { execSync } from "node:child_process";
 import { TaskStore, getProjectRootFromWorktree } from "@fusion/core";
 
 function makeCtx(cwd: string) {
@@ -15,6 +16,10 @@ async function loadExtension() {
   return mod.default;
 }
 
+function git(cwd: string, args: string): string {
+  return execSync(`git ${args}`, { cwd, encoding: "utf8", stdio: ["ignore", "pipe", "pipe"] }).trim();
+}
+
 describe("extension task tools resolve repo root from worktrees", () => {
   beforeEach(() => {
     vi.resetModules();
@@ -70,6 +75,54 @@ describe("extension task tools resolve repo root from worktrees", () => {
     }
   });
 
+  it("uses canonical project root for task tools from AI merge temp linked worktrees", async () => {
+    const repoRoot = await mkdtemp(join(tmpdir(), "fn-6079-cli-"));
+    const mergeRoot = await mkdtemp(join(tmpdir(), "fusion-ai-merge-fn-6079-"));
+    try {
+      git(repoRoot, "init -q -b main");
+      git(repoRoot, "config user.email test@example.com");
+      git(repoRoot, "config user.name Test");
+      await writeFile(join(repoRoot, "base.txt"), "base\n");
+      git(repoRoot, "add -A");
+      git(repoRoot, "commit -q -m base");
+
+      const store = new TaskStore(repoRoot);
+      await store.init();
+      const created = await store.createTask({ description: "Task visible from merge worktree" });
+      git(repoRoot, `worktree add --detach ${JSON.stringify(mergeRoot)} HEAD`);
+      await mkdir(join(mergeRoot, "packages"), { recursive: true });
+
+      const extension = await loadExtension();
+      const tools = new Map<string, any>();
+      extension({
+        registerTool(def: any) {
+          tools.set(def.name, def);
+        },
+        registerCommand: vi.fn(),
+        registerShortcut: vi.fn(),
+        registerFlag: vi.fn(),
+        on: vi.fn(),
+      } as any);
+
+      const showTool = tools.get("fn_task_show");
+      const listTool = tools.get("fn_task_list");
+
+      const show = await showTool.execute("show", { id: created.id }, undefined, undefined, makeCtx(mergeRoot));
+      const list = await listTool.execute("list", {}, undefined, undefined, makeCtx(join(mergeRoot, "packages")));
+
+      expect(show.content[0].text).toContain("Task visible from merge worktree");
+      expect(list.content[0].text).toContain(created.id);
+    } finally {
+      try {
+        git(repoRoot, `worktree remove --force ${JSON.stringify(mergeRoot)}`);
+      } catch {
+        // best effort cleanup
+      }
+      await rm(mergeRoot, { recursive: true, force: true });
+      await rm(repoRoot, { recursive: true, force: true });
+    }
+  });
+
   it("falls back when getProjectRootFromWorktree is unavailable in no-task context", async () => {
     const repoRoot = await mkdtemp(join(tmpdir(), "fn-4927-cli-"));
     const worktreeRoot = join(repoRoot, ".worktrees", "ambient");
diff --git a/packages/core/src/__tests__/pi-extensions.test.ts b/packages/core/src/__tests__/pi-extensions.test.ts
index 1931ffec9d..f85fda17fe 100644
--- a/packages/core/src/__tests__/pi-extensions.test.ts
+++ b/packages/core/src/__tests__/pi-extensions.test.ts
@@ -1,9 +1,14 @@
 import { describe, expect, it } from "vitest";
-import { mkdtempSync, mkdirSync, rmSync } from "node:fs";
+import { mkdtempSync, mkdirSync, realpathSync, rmSync, writeFileSync } from "node:fs";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
+import { execSync } from "node:child_process";
 import { getProjectRootFromWorktree, resolvePiExtensionProjectRoot } from "../pi-extensions.js";
 
+function git(cwd: string, args: string): string {
+  return execSync(`git ${args}`, { cwd, encoding: "utf8", stdio: ["ignore", "pipe", "pipe"] }).trim();
+}
+
 describe("getProjectRootFromWorktree", () => {
   it("detects POSIX worktree paths", () => {
     expect(getProjectRootFromWorktree("/repo/.worktrees/fn-001")).toBe("/repo");
@@ -32,6 +37,35 @@ describe("getProjectRootFromWorktree", () => {
       }),
     ).toBe("/tmp");
   });
+
+  it("detects arbitrary Git linked worktree paths when the parent has Fusion metadata", () => {
+    const root = mkdtempSync(join(tmpdir(), "fn-6079-root-"));
+    const worktreeRoot = mkdtempSync(join(tmpdir(), "fusion-ai-merge-fn-6079-"));
+    try {
+      const expectedRoot = realpathSync(root);
+      git(root, "init -q -b main");
+      git(root, "config user.email test@example.com");
+      git(root, "config user.name Test");
+      mkdirSync(join(root, ".fusion"), { recursive: true });
+      writeFileSync(join(root, "base.txt"), "base\n");
+      git(root, "add -A");
+      git(root, "commit -q -m base");
+      git(root, `worktree add --detach ${JSON.stringify(worktreeRoot)} HEAD`);
+      mkdirSync(join(worktreeRoot, "subdir"), { recursive: true });
+
+      expect(getProjectRootFromWorktree(worktreeRoot)).toBe(expectedRoot);
+      expect(getProjectRootFromWorktree(join(worktreeRoot, "subdir"))).toBe(expectedRoot);
+      expect(resolvePiExtensionProjectRoot(worktreeRoot)).toBe(expectedRoot);
+    } finally {
+      try {
+        git(root, `worktree remove --force ${JSON.stringify(worktreeRoot)}`);
+      } catch {
+        // best effort cleanup
+      }
+      rmSync(worktreeRoot, { recursive: true, force: true });
+      rmSync(root, { recursive: true, force: true });
+    }
+  });
 });
 
 describe("@fusion/core export surface", () => {
diff --git a/packages/core/src/pi-extensions.ts b/packages/core/src/pi-extensions.ts
index 6118bf64f5..73e527c06b 100644
--- a/packages/core/src/pi-extensions.ts
+++ b/packages/core/src/pi-extensions.ts
@@ -1,6 +1,7 @@
 import { existsSync, mkdirSync, readdirSync, readFileSync, statSync, writeFileSync } from "node:fs";
 import { homedir } from "node:os";
-import { basename, isAbsolute, join, relative, resolve, sep, win32 } from "node:path";
+import { basename, dirname, isAbsolute, join, relative, resolve, sep, win32 } from "node:path";
+import { spawnSync } from "node:child_process";
 
 const FUSION_DISABLED_EXTENSIONS_KEY = "fusionDisabledExtensions";
 
@@ -66,9 +67,42 @@ export function getProjectRootFromWorktree(
     }
   }
 
+  const gitLinkedWorktreeRoot = getProjectRootFromGitLinkedWorktree(cwd);
+  if (gitLinkedWorktreeRoot) {
+    return gitLinkedWorktreeRoot;
+  }
+
   return null;
 }
 
+function getProjectRootFromGitLinkedWorktree(cwd: string): string | null {
+  const resolvedCwd = resolve(cwd);
+  const commonDir = spawnSync("git", ["rev-parse", "--git-common-dir"], {
+    cwd: resolvedCwd,
+    encoding: "utf8",
+    stdio: ["ignore", "pipe", "ignore"],
+  });
+  const gitDir = spawnSync("git", ["rev-parse", "--git-dir"], {
+    cwd: resolvedCwd,
+    encoding: "utf8",
+    stdio: ["ignore", "pipe", "ignore"],
+  });
+  if (commonDir.status !== 0 || gitDir.status !== 0) {
+    return null;
+  }
+
+  const resolvedCommonDir = resolve(resolvedCwd, commonDir.stdout.trim());
+  const resolvedGitDir = resolve(resolvedCwd, gitDir.stdout.trim());
+  if (!resolvedCommonDir || !resolvedGitDir || resolvedCommonDir === resolvedGitDir) {
+    return null;
+  }
+
+  const parentRoot = resolvedCommonDir.endsWith(`${sep}.git`)
+    ? dirname(resolvedCommonDir)
+    : resolvedCommonDir;
+  return existsSync(join(parentRoot, ".fusion")) ? parentRoot : null;
+}
+
 export function resolvePiExtensionProjectRoot(cwd: string): string {
   const worktreeProjectRoot = getProjectRootFromWorktree(cwd);
   if (worktreeProjectRoot && existsSync(join(worktreeProjectRoot, ".fusion"))) {