chore: consolidate test files into __tests__/ dirs and clean stray engine artifacts

- Move all co-located *.test.* files into sibling __tests__/ directories so the
  layout is consistent across packages (159 renames + content-rewrite moves).
  Updates relative imports, vi.mock specifiers, and __dirname/import.meta.url
  path resolutions where tests read fixtures from disk.
- Drop tracked tsc-emit alongside engine .ts sources (auth-storage/logger/
  skill-resolver/context-limit-detector/pi.{js,d.ts,*.map}). These were
  accidentally committed in a merge and the stale pi.js was masking a real
  test-mock vs source mismatch (tests imported "../pi.js" and vite preferred
  the stale build over pi.ts).
- Add packages/engine/.gitignore to block future src/*.{js,d.ts,map}.
- Refactor plugin pi-module seams (openclaw/paperclip/hermes) to ESM-import
  createFnAgent / promptWithFallback / describeModel from @fusion/engine
  instead of require()-ing packages/engine/src/pi.js. Adds @fusion/engine to
  the two plugin package.jsons that were missing it; exports describeModel
  from the engine public API.
- Fix engine test mocks now that they run against current pi.ts: add
  ModelRegistry.create static to mocks in pi.test.ts and pi-create-fn-agent
  .test.ts; switch three boundary-result toEqual assertions to toMatchObject
  so the new content/isError fields don't trip exact-match comparison.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

packages/core/src/__tests__/agent-companies-exporter.test.ts

@@ -4,15 +4,15 @@ import { dirname, join } from "node:path";
 
 import { afterEach, describe, expect, it } from "vitest";
 
-import { parseYamlFrontmatter } from "./agent-companies-parser.js";
+import { parseYamlFrontmatter } from "../agent-companies-parser.js";
 import {
   agentToCompaniesManifest,
   exportAgentsToDirectory,
   generateAgentMd,
   generateCompanyMd,
   slugify,
-} from "./agent-companies-exporter.js";
-import type { Agent } from "./types.js";
+} from "../agent-companies-exporter.js";
+import type { Agent } from "../types.js";
 
 const tempDirs: string[] = [];
 

packages/core/src/__tests__/agent-companies-parser.test.ts

@@ -22,7 +22,7 @@ import {
   parseTaskManifest,
   parseTeamManifest,
   parseYamlFrontmatter,
-} from "./agent-companies-parser.js";
+} from "../agent-companies-parser.js";
 
 const tempDirs: string[] = [];
 

packages/core/src/__tests__/agent-companies-types.test.ts

@@ -11,7 +11,7 @@ import type {
   SourceReference,
   TaskManifest,
   TeamManifest,
-} from "./agent-companies-types.js";
+} from "../agent-companies-types.js";
 
 describe("agent-companies-types", () => {
   it("supports schema and kind literals", () => {

packages/core/src/__tests__/agent-permissions.test.ts

@@ -3,9 +3,9 @@ import {
   computeAccessState,
   isValidPermission,
   normalizePermissions,
-} from "./agent-permissions.js";
-import { AGENT_PERMISSIONS } from "./types.js";
-import type { Agent, AgentCapability, AgentPermission } from "./types.js";
+} from "../agent-permissions.js";
+import { AGENT_PERMISSIONS } from "../types.js";
+import type { Agent, AgentCapability, AgentPermission } from "../types.js";
 
 function makeAgent(role: AgentCapability, permissions?: Record<string, boolean>): Agent {
   return {

packages/core/src/__tests__/agent-prompts.test.ts

@@ -4,8 +4,8 @@ import {
   resolveAgentPrompt,
   getAvailableTemplates,
   getTemplatesForRole,
-} from "./agent-prompts.js";
-import type { AgentPromptsConfig, AgentPromptTemplate } from "./types.js";
+} from "../agent-prompts.js";
+import type { AgentPromptsConfig, AgentPromptTemplate } from "../types.js";
 
 // ---------------------------------------------------------------------------
 // resolveAgentPrompt

packages/core/src/__tests__/agent-store.test.ts

@@ -11,15 +11,15 @@
  * validation, concurrency locking, and SQLite persistence.
  */
 import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
-import { AgentStore } from "./agent-store.js";
-import { Database } from "./db.js";
-import { TaskStore } from "./store.js";
+import { AgentStore } from "../agent-store.js";
+import { Database } from "../db.js";
+import { TaskStore } from "../store.js";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync, existsSync, mkdirSync, writeFileSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { createHash } from "node:crypto";
-import { CheckoutConflictError, type AgentCapability, type AgentState } from "./types.js";
+import { CheckoutConflictError, type AgentCapability, type AgentState } from "../types.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "fn-agent-store-test-"));

packages/core/src/__tests__/ai-summarize.test.ts

@@ -13,7 +13,7 @@ import {
   RateLimitError,
   AiServiceError,
   __resetSummarizeState,
-} from "./ai-summarize.js";
+} from "../ai-summarize.js";
 
 describe("ai-summarize", () => {
   beforeEach(() => {

packages/core/src/__tests__/app-version.test.ts

@@ -2,7 +2,7 @@ import { describe, it, expect, beforeEach, vi, afterEach } from "vitest";
 import { readFileSync, existsSync } from "node:fs";
 import { dirname, join } from "node:path";
 import { fileURLToPath } from "node:url";
-import { getAppVersion, parseSemver } from "./app-version.js";
+import { getAppVersion, parseSemver } from "../app-version.js";
 
 describe("getAppVersion", () => {
   it("should return a non-empty string", () => {
@@ -20,10 +20,10 @@ describe("getAppVersion", () => {
   it("should return the actual package version from package.json", () => {
     const version = getAppVersion();
     // Read the actual version from package.json for verification
-    // The test file is at packages/core/src/app-version.test.ts
+    // The test file is at packages/core/src/__tests__/app-version.test.ts
     // Walk up from this file to find packages/core/package.json
     const testFileDir = dirname(fileURLToPath(import.meta.url));
-    const coreDir = join(testFileDir, "..");
+    const coreDir = join(testFileDir, "..", "..");
     const pkgPath = join(coreDir, "package.json");
     const pkg = JSON.parse(readFileSync(pkgPath, "utf-8"));
     expect(version).toBe(pkg.version);
@@ -36,7 +36,7 @@ describe("getAppVersion", () => {
     expect(version1).toBe(version2);
     // Verify cached version matches the actual package version
     const testFileDir = dirname(fileURLToPath(import.meta.url));
-    const coreDir = join(testFileDir, "..");
+    const coreDir = join(testFileDir, "..", "..");
     const pkgPath = join(coreDir, "package.json");
     const pkg = JSON.parse(readFileSync(pkgPath, "utf-8"));
     expect(version1).toBe(pkg.version);

packages/core/src/__tests__/automation-store.test.ts

@@ -1,10 +1,10 @@
 import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
-import { AutomationStore } from "./automation-store.js";
+import { AutomationStore } from "../automation-store.js";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync } from "node:fs";
 import { tmpdir } from "node:os";
-import type { ScheduledTask, AutomationRunResult, AutomationStep } from "./automation.js";
+import type { ScheduledTask, AutomationRunResult, AutomationStep } from "../automation.js";
 import { randomUUID } from "node:crypto";
 
 /** Create a test automation step. */

packages/core/src/__tests__/automation.test.ts

@@ -9,7 +9,7 @@ import {
   type ScheduleType,
   type ScheduledTask,
   type ScheduledTaskCreateInput,
-} from "./automation.js";
+} from "../automation.js";
 
 const expectedPresetMap = {
   hourly: "0 * * * *",

packages/core/src/__tests__/backup.test.ts

@@ -12,9 +12,9 @@ import {
   validateBackupDir,
   runBackupCommand,
   syncBackupRoutine,
-} from "./backup.js";
-import { RoutineStore } from "./routine-store.js";
-import type { ProjectSettings } from "./types.js";
+} from "../backup.js";
+import { RoutineStore } from "../routine-store.js";
+import type { ProjectSettings } from "../types.js";
 
 describe("BackupManager", () => {
   let tempDir: string;

packages/core/src/__tests__/board.test.ts

@@ -1,6 +1,6 @@
 import { describe, it, expect } from "vitest";
-import { canTransition, getValidTransitions, resolveDependencyOrder } from "./board.js";
-import { VALID_TRANSITIONS, type Task, type Column } from "./types.js";
+import { canTransition, getValidTransitions, resolveDependencyOrder } from "../board.js";
+import { VALID_TRANSITIONS, type Task, type Column } from "../types.js";
 
 /**
  * Board logic tests

packages/core/src/__tests__/central-core.test.ts

@@ -2,11 +2,11 @@ import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
 import { mkdtempSync, rmSync, mkdirSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
-import { CentralCore } from "./central-core.js";
-import { NodeDiscovery } from "./node-discovery.js";
-import { NodeConnection, type ConnectionResult } from "./node-connection.js";
-import { getAppVersion } from "./app-version.js";
-import * as systemMetrics from "./system-metrics.js";
+import { CentralCore } from "../central-core.js";
+import { NodeDiscovery } from "../node-discovery.js";
+import { NodeConnection, type ConnectionResult } from "../node-connection.js";
+import { getAppVersion } from "../app-version.js";
+import * as systemMetrics from "../system-metrics.js";
 import type {
   RegisteredProject,
   ProjectHealth,
@@ -15,7 +15,7 @@ import type {
   SystemMetrics,
   DiscoveryConfig,
   DiscoveredNode,
-} from "./types.js";
+} from "../types.js";
 
 describe("CentralCore", () => {
   let tempDir: string;
@@ -2673,7 +2673,7 @@ describe("CentralCore", () => {
           url: "http://localhost:9992",
         });
 
-        let emittedPayload: { nodeId: string; remoteNodeId: string; state: import("./types.js").SettingsSyncState } | undefined;
+        let emittedPayload: { nodeId: string; remoteNodeId: string; state: import("../types.js").SettingsSyncState } | undefined;
         central.on("settings:sync:completed", (payload) => {
           emittedPayload = payload;
         });

packages/core/src/__tests__/central-db.test.ts

@@ -2,7 +2,7 @@ import { describe, it, expect, beforeEach, afterEach } from "vitest";
 import { mkdtempSync, rmSync, statSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
-import { CentralDatabase, createCentralDatabase, toJson, fromJson } from "./central-db.js";
+import { CentralDatabase, createCentralDatabase, toJson, fromJson } from "../central-db.js";
 
 describe("CentralDatabase", () => {
   let tempDir: string;

packages/core/src/__tests__/daemon-token.test.ts

@@ -3,13 +3,13 @@ import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync } from "node:fs";
 import { tmpdir } from "node:os";
-import { GlobalSettingsStore } from "./global-settings.js";
+import { GlobalSettingsStore } from "../global-settings.js";
 import {
   DaemonTokenManager,
   DAEMON_TOKEN_PREFIX,
   DAEMON_TOKEN_HEX_LENGTH,
   isDaemonTokenFormat,
-} from "./daemon-token.js";
+} from "../daemon-token.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "fn-daemon-token-test-"));

packages/core/src/__tests__/db-migrate.test.ts

@@ -1,6 +1,6 @@
 import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
-import { detectLegacyData, migrateFromLegacy, getMigrationStatus } from "./db-migrate.js";
-import { Database } from "./db.js";
+import { detectLegacyData, migrateFromLegacy, getMigrationStatus } from "../db-migrate.js";
+import { Database } from "../db.js";
 import { mkdir, writeFile, rm, readdir, appendFile } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync, existsSync } from "node:fs";

packages/core/src/__tests__/db.test.ts

@@ -1,6 +1,6 @@
 import { describe, it, expect, beforeEach, afterEach } from "vitest";
-import { Database, createDatabase, toJson, toJsonNullable, fromJson, normalizeTaskComments } from "./db.js";
-import { DEFAULT_PROJECT_SETTINGS } from "./types.js";
+import { Database, createDatabase, toJson, toJsonNullable, fromJson, normalizeTaskComments } from "../db.js";
+import { DEFAULT_PROJECT_SETTINGS } from "../types.js";
 import { mkdtempSync, existsSync } from "node:fs";
 import { join } from "node:path";
 import { tmpdir } from "node:os";

packages/core/src/__tests__/fts5-guard.test.ts

@@ -17,9 +17,9 @@ import { mkdtempSync } from "node:fs";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
 import { rm } from "node:fs/promises";
-import { Database } from "./db.js";
-import { ArchiveDatabase } from "./archive-db.js";
-import { TaskStore } from "./store.js";
+import { Database } from "../db.js";
+import { ArchiveDatabase } from "../archive-db.js";
+import { TaskStore } from "../store.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "kb-fts5-guard-test-"));

packages/core/src/__tests__/gh-cli.test.ts

@@ -2,7 +2,7 @@ import { describe, it, expect, vi } from "vitest";
 import {
   getGhErrorMessage,
   parseRepoFromRemote,
-} from "./gh-cli.js";
+} from "../gh-cli.js";
 
 // Tests for pure functions (no child_process dependency)
 describe("getGhErrorMessage", () => {

packages/core/src/__tests__/global-settings.test.ts

@@ -1,6 +1,6 @@
 import { describe, it, expect, beforeEach, afterEach } from "vitest";
-import { GlobalSettingsStore, defaultGlobalDir } from "./global-settings.js";
-import { DEFAULT_GLOBAL_SETTINGS } from "./types.js";
+import { GlobalSettingsStore, defaultGlobalDir } from "../global-settings.js";
+import { DEFAULT_GLOBAL_SETTINGS } from "../types.js";
 import { readFile, rm, writeFile, mkdir } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync, existsSync } from "node:fs";

packages/core/src/__tests__/insight-store.test.ts

@@ -11,8 +11,8 @@
  */
 
 import { describe, it, expect, beforeEach, vi } from "vitest";
-import { Database, createDatabase, fromJson } from "./db.js";
-import { InsightStore, computeInsightFingerprint } from "./insight-store.js";
+import { Database, createDatabase, fromJson } from "../db.js";
+import { InsightStore, computeInsightFingerprint } from "../insight-store.js";
 import { mkdtempSync, rmSync } from "node:fs";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
@@ -24,7 +24,7 @@ import type {
   InsightProvenance,
   InsightRunTrigger,
   InsightRunStatus,
-} from "./insight-types.js";
+} from "../insight-types.js";
 
 // ── Test Fixtures ────────────────────────────────────────────────────
 

packages/core/src/__tests__/logger.test.ts

@@ -1,5 +1,5 @@
 import { describe, it, expect, vi, beforeEach, afterEach } from "vitest";
-import { createLogger } from "./logger.js";
+import { createLogger } from "../logger.js";
 
 describe("core createLogger", () => {
   let logSpy: ReturnType<typeof vi.spyOn>;

packages/core/src/__tests__/memory-backend.test.ts

@@ -34,8 +34,8 @@ import {
   listAgentMemoryFiles,
   readAgentMemoryFile,
   writeAgentMemoryFile,
-} from "./memory-backend.js";
-import type { MemoryBackend } from "./memory-backend.js";
+} from "../memory-backend.js";
+import type { MemoryBackend } from "../memory-backend.js";
 
 describe("memory-backend", () => {
   let tempDir: string;

packages/core/src/__tests__/memory-compaction.test.ts

@@ -8,7 +8,7 @@ import {
   DEFAULT_AUTO_SUMMARIZE_SCHEDULE,
   AiServiceError,
   __resetCompactionState,
-} from "./memory-compaction.js";
+} from "../memory-compaction.js";
 
 describe("memory-compaction", () => {
   beforeEach(() => {

packages/core/src/__tests__/memory-dreams.test.ts

@@ -12,7 +12,7 @@ import {
   MEMORY_DREAMS_SCHEDULE_NAME,
   processAgentMemoryDreams,
   syncMemoryDreamsAutomation,
-} from "./memory-dreams.js";
+} from "../memory-dreams.js";
 
 describe("memory-dreams automation", () => {
   it("creates a scheduled dream processor automation with defaults", () => {

packages/core/src/__tests__/memory-insights.test.ts

@@ -22,9 +22,9 @@ import {
   createInsightExtractionAutomation,
   validatePruneCandidate,
   applyMemoryPruning,
-} from "./memory-insights.js";
-import type { MemoryInsight, InsightExtractionResult } from "./memory-insights.js";
-import type { ProjectSettings } from "./types.js";
+} from "../memory-insights.js";
+import type { MemoryInsight, InsightExtractionResult } from "../memory-insights.js";
+import type { ProjectSettings } from "../types.js";
 
 describe("memory-insights", () => {
   let tempDir: string;
@@ -630,7 +630,7 @@ import {
   MEMORY_AUDIT_PATH,
   readMemoryAudit,
   writeMemoryAudit,
-} from "./memory-insights.js";
+} from "../memory-insights.js";
 
 describe("memory-insights audit file operations", () => {
   let tempDir: string;
@@ -690,7 +690,7 @@ describe("memory-insights audit file operations", () => {
 import {
   processInsightExtractionRun,
   processAndAuditInsightExtraction,
-} from "./memory-insights.js";
+} from "../memory-insights.js";
 
 describe("memory-insights run processing", () => {
   let tempDir: string;
@@ -1021,7 +1021,7 @@ Durable content.`;
 import {
   generateMemoryAudit,
   renderMemoryAuditMarkdown,
-} from "./memory-insights.js";
+} from "../memory-insights.js";
 
 describe("memory-insights audit generation", () => {
   let tempDir: string;

packages/core/src/__tests__/message-store.test.ts

@@ -2,9 +2,9 @@ import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
 import { mkdtempSync, rmSync } from "node:fs";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
-import { Database } from "./db.js";
-import { MessageStore } from "./message-store.js";
-import type { Message, Mailbox } from "./types.js";
+import { Database } from "../db.js";
+import { MessageStore } from "../message-store.js";
+import type { Message, Mailbox } from "../types.js";
 
 describe("MessageStore", () => {
   let store: MessageStore;

packages/core/src/__tests__/migration.test.ts

@@ -13,8 +13,8 @@ import {
   BackwardCompat,
   ProjectRequiredError,
   type ProjectSetupInput,
-} from "./migration.js";
-import { CentralCore } from "./central-core.js";
+} from "../migration.js";
+import { CentralCore } from "../central-core.js";
 
 // Helper to create a fake kb project
 function createFakeKbProject(dir: string): void {

packages/core/src/__tests__/mission-factory-parity.integration.test.ts

@@ -16,7 +16,7 @@ import { mkdtempSync } from "node:fs";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
-import { TaskStore } from "./store.js";
+import { TaskStore } from "../store.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "kb-mission-factory-parity-"));

packages/core/src/__tests__/mission-integration.test.ts

@@ -3,8 +3,8 @@ import { mkdtempSync } from "node:fs";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
-import { TaskStore } from "./store.js";
-import { Database } from "./db.js";
+import { TaskStore } from "../store.js";
+import { Database } from "../db.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "kb-mission-integration-"));

packages/core/src/__tests__/mission-planning-context.integration.test.ts

@@ -3,7 +3,7 @@ import { mkdtempSync } from "node:fs";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
-import { TaskStore } from "./store.js";
+import { TaskStore } from "../store.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "kb-mission-planning-"));

packages/core/src/__tests__/mission-store.test.ts

@@ -1,6 +1,6 @@
 import { describe, it, expect, beforeEach, afterEach } from "vitest";
-import { MissionStore } from "./mission-store.js";
-import { Database } from "./db.js";
+import { MissionStore } from "../mission-store.js";
+import { Database } from "../db.js";
 import { mkdtempSync } from "node:fs";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
@@ -1484,10 +1484,10 @@ describe("MissionStore", () => {
       const m1Data = withHierarchy.milestones.find((m) => m.id === m1.id)!;
       expect(m1Data.slices).toHaveLength(2);
 
-      const s1Data = m1Data.slices.find((s) => s.id === s1.id)! as import("./mission-types.js").SliceWithFeatures;
+      const s1Data = m1Data.slices.find((s) => s.id === s1.id)! as import("../mission-types.js").SliceWithFeatures;
       expect(s1Data.features).toHaveLength(2);
-      expect(s1Data.features.find((f: import("./mission-types.js").MissionFeature) => f.id === f1.id)).toBeDefined();
-      expect(s1Data.features.find((f: import("./mission-types.js").MissionFeature) => f.id === f2.id)).toBeDefined();
+      expect(s1Data.features.find((f: import("../mission-types.js").MissionFeature) => f.id === f1.id)).toBeDefined();
+      expect(s1Data.features.find((f: import("../mission-types.js").MissionFeature) => f.id === f2.id)).toBeDefined();
     });
   });
 
@@ -1660,7 +1660,7 @@ describe("MissionStore", () => {
 
     it("throws if feature not found", async () => {
       // Need a TaskStore reference for this test
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1670,7 +1670,7 @@ describe("MissionStore", () => {
     });
 
     it("throws if feature is already triaged", async () => {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1690,7 +1690,7 @@ describe("MissionStore", () => {
     });
 
     it("creates a task and links it to the feature", async () => {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1722,7 +1722,7 @@ describe("MissionStore", () => {
     });
 
     it("uses provided title and description overrides", async () => {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1743,7 +1743,7 @@ describe("MissionStore", () => {
     });
 
     it("emits feature:linked event", async () => {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1778,7 +1778,7 @@ describe("MissionStore", () => {
     });
 
     it("throws if slice not found", async () => {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1788,7 +1788,7 @@ describe("MissionStore", () => {
     });
 
     it("triages all defined features in a slice", async () => {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1815,7 +1815,7 @@ describe("MissionStore", () => {
     });
 
     it("skips already triaged features", async () => {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1837,7 +1837,7 @@ describe("MissionStore", () => {
     });
 
     it("returns empty array if no defined features", async () => {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const msWithTs = ts.getMissionStore();
 
@@ -1855,10 +1855,10 @@ describe("MissionStore", () => {
   describe("activateSlice with autoAdvance", () => {
     /** Helper to create a MissionStore with a real TaskStore reference */
     async function createStoreWithTaskStore(): Promise<{
-      ts: import("./store.js").TaskStore;
+      ts: import("../store.js").TaskStore;
       ms: MissionStore;
     }> {
-      const { TaskStore } = await import("./store.js");
+      const { TaskStore } = await import("../store.js");
       const ts = new TaskStore(fusionDir, join(fusionDir, ".fusion-global-settings"));
       const ms = ts.getMissionStore();
       return { ts, ms };

packages/core/src/__tests__/node-connection.test.ts

@@ -1,7 +1,7 @@
 import { afterEach, beforeEach, describe, expect, it, vi } from "vitest";
-import { NodeConnection } from "./node-connection.js";
-import type { CentralCore } from "./central-core.js";
-import type { NodeConfig } from "./types.js";
+import { NodeConnection } from "../node-connection.js";
+import type { CentralCore } from "../central-core.js";
+import type { NodeConfig } from "../types.js";
 
 function jsonResponse(body: unknown, status = 200): Response {
   return new Response(JSON.stringify(body), {

packages/core/src/__tests__/node-discovery.test.ts

@@ -1,5 +1,5 @@
 import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
-import type { DiscoveryConfig, DiscoveredNode } from "./types.js";
+import type { DiscoveryConfig, DiscoveredNode } from "../types.js";
 
 interface MockBrowser {
   on: ReturnType<typeof vi.fn>;
@@ -20,7 +20,7 @@ vi.mock("bonjour-service", () => ({
   default: BonjourMock,
 }));
 
-import { NodeDiscovery } from "./node-discovery.js";
+import { NodeDiscovery } from "../node-discovery.js";
 
 function createMockBrowser(): MockBrowser {
   const listeners = new Map<string, Set<(...args: unknown[]) => void>>();

packages/core/src/__tests__/plugin-loader.test.ts

@@ -3,9 +3,9 @@ import { writeFile, mkdir } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync, existsSync } from "node:fs";
 import { tmpdir } from "node:os";
-import { PluginLoader } from "./plugin-loader.js";
-import { PluginStore } from "./plugin-store.js";
-import type { FusionPlugin, PluginManifest } from "./plugin-types.js";
+import { PluginLoader } from "../plugin-loader.js";
+import { PluginStore } from "../plugin-store.js";
+import type { FusionPlugin, PluginManifest } from "../plugin-types.js";
 
 // Test plugin manifest
 function makeManifest(overrides: Partial<PluginManifest> = {}): PluginManifest {
@@ -131,11 +131,11 @@ async function loadPluginLoaderWithMockedLogger() {
     return logger;
   });
 
-  vi.doMock("./logger.js", () => ({
+  vi.doMock("../logger.js", () => ({
     createLogger: createLoggerMock,
   }));
 
-  const { PluginLoader: MockedPluginLoader } = await import("./plugin-loader.js");
+  const { PluginLoader: MockedPluginLoader } = await import("../plugin-loader.js");
   return { MockedPluginLoader, createLoggerMock, loggerMap };
 }
 

packages/core/src/__tests__/plugin-store.test.ts

@@ -1,10 +1,10 @@
 import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
-import { PluginStore } from "./plugin-store.js";
+import { PluginStore } from "../plugin-store.js";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync } from "node:fs";
 import { tmpdir } from "node:os";
-import type { PluginManifest, PluginState } from "./plugin-types.js";
+import type { PluginManifest, PluginState } from "../plugin-types.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "kb-plugin-test-"));

packages/core/src/__tests__/plugin-types.test.ts

@@ -1,5 +1,5 @@
 import { describe, it, expect } from "vitest";
-import { validatePluginManifest } from "./plugin-types.js";
+import { validatePluginManifest } from "../plugin-types.js";
 
 describe("validatePluginManifest", () => {
   // ── Valid Manifests ─────────────────────────────────────────────────

packages/core/src/__tests__/project-memory.test.ts

@@ -14,7 +14,7 @@ import {
   readProjectMemoryWithBackend,
   searchProjectMemory,
   resolveMemoryInstructionContext,
-} from "./project-memory.js";
+} from "../project-memory.js";
 
 describe("project-memory", () => {
   let testDir: string;

packages/core/src/__tests__/prompt-overrides.test.ts

@@ -13,7 +13,7 @@ import {
   isValidPromptKey,
   isValidPromptOverrideMap,
   assertValidPromptOverrideMap,
-} from "./prompt-overrides.js";
+} from "../prompt-overrides.js";
 
 describe("prompt-overrides", () => {
   describe("PROMPT_KEY_CATALOG", () => {

packages/core/src/__tests__/reflection-store.test.ts

@@ -3,8 +3,8 @@ import { existsSync, mkdtempSync, readFileSync, writeFileSync } from "node:fs";
 import { rm } from "node:fs/promises";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
-import { ReflectionStore } from "./reflection-store.js";
-import type { AgentReflection, ReflectionTrigger } from "./types.js";
+import { ReflectionStore } from "../reflection-store.js";
+import type { AgentReflection, ReflectionTrigger } from "../types.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "kb-reflection-store-test-"));

packages/core/src/__tests__/roadmap-handoff.test.ts

@@ -8,8 +8,8 @@ import {
   mapRoadmapToMissionHandoff,
   mapRoadmapWithHierarchyToMissionHandoff,
   mapAllFeaturesToTaskHandoffs,
-} from "./roadmap-handoff.js";
-import { normalizeRoadmapMilestoneOrder } from "./roadmap-ordering.js";
+} from "../roadmap-handoff.js";
+import { normalizeRoadmapMilestoneOrder } from "../roadmap-ordering.js";
 import type {
   Roadmap,
   RoadmapMilestone,
@@ -17,7 +17,7 @@ import type {
   RoadmapWithHierarchy,
   RoadmapFeatureTaskPlanningHandoff,
   RoadmapMissionPlanningHandoff,
-} from "./roadmap-types.js";
+} from "../roadmap-types.js";
 
 // ── Test Fixtures ─────────────────────────────────────────────────────────────
 

packages/core/src/__tests__/roadmap-ordering.test.ts

@@ -5,8 +5,8 @@ import {
   moveRoadmapFeature,
   normalizeRoadmapFeatureOrder,
   normalizeRoadmapMilestoneOrder,
-} from "./roadmap-ordering.js";
-import type { RoadmapFeature, RoadmapMilestone } from "./roadmap-types.js";
+} from "../roadmap-ordering.js";
+import type { RoadmapFeature, RoadmapMilestone } from "../roadmap-types.js";
 
 function createMilestone(
   id: string,

packages/core/src/__tests__/roadmap-store.test.ts

@@ -1,6 +1,6 @@
 import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
-import { Database, createDatabase } from "./db.js";
-import { RoadmapStore } from "./roadmap-store.js";
+import { Database, createDatabase } from "../db.js";
+import { RoadmapStore } from "../roadmap-store.js";
 import type {
   RoadmapCreateInput,
   RoadmapUpdateInput,
@@ -11,7 +11,7 @@ import type {
   RoadmapMilestoneReorderInput,
   RoadmapFeatureReorderInput,
   RoadmapFeatureMoveInput,
-} from "./roadmap-types.js";
+} from "../roadmap-types.js";
 import { mkdtempSync } from "node:fs";
 import { join } from "node:path";
 import { tmpdir } from "node:os";

packages/core/src/__tests__/routine-store.test.ts

@@ -1,5 +1,5 @@
 import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
-import { RoutineStore } from "./routine-store.js";
+import { RoutineStore } from "../routine-store.js";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync, existsSync } from "node:fs";
@@ -9,7 +9,7 @@ import type {
   RoutineCreateInput,
   RoutineExecutionResult,
   RoutineTrigger,
-} from "./routine.js";
+} from "../routine.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "kb-routine-test-"));

packages/core/src/__tests__/run-audit.integration.test.ts

@@ -16,9 +16,9 @@ import { mkdtempSync } from "node:fs";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
-import { Database } from "./db.js";
-import { TaskStore } from "./store.js";
-import type { RunAuditEventInput, RunAuditEvent } from "./types.js";
+import { Database } from "../db.js";
+import { TaskStore } from "../store.js";
+import type { RunAuditEventInput, RunAuditEvent } from "../types.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "fn-run-audit-integration-test-"));

packages/core/src/__tests__/run-audit.test.ts

@@ -3,9 +3,9 @@ import { mkdtempSync } from "node:fs";
 import { rm } from "node:fs/promises";
 import { join } from "node:path";
 import { tmpdir } from "node:os";
-import { Database } from "./db.js";
-import { TaskStore } from "./store.js";
-import type { RunAuditEventInput, RunAuditEventFilter } from "./types.js";
+import { Database } from "../db.js";
+import { TaskStore } from "../store.js";
+import type { RunAuditEventInput, RunAuditEventFilter } from "../types.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "fn-run-audit-test-"));

packages/core/src/__tests__/run-command.test.ts

@@ -1,5 +1,5 @@
 import { describe, expect, it } from "vitest";
-import { runCommandAsync } from "./run-command.js";
+import { runCommandAsync } from "../run-command.js";
 
 function isProcessAlive(pid: number): boolean {
   try {

packages/core/src/__tests__/settings-export.test.ts

@@ -2,9 +2,9 @@ import { describe, it, expect, beforeEach, afterEach } from "vitest";
 import { mkdtempSync, writeFileSync, rmSync, mkdirSync, existsSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
-import type { TaskStore } from "./store.js";
-import type { GlobalSettingsStore } from "./global-settings.js";
-import type { Settings, GlobalSettings, ProjectSettings } from "./types.js";
+import type { TaskStore } from "../store.js";
+import type { GlobalSettingsStore } from "../global-settings.js";
+import type { Settings, GlobalSettings, ProjectSettings } from "../types.js";
 import {
   exportSettings,
   importSettings,
@@ -15,7 +15,7 @@ import {
   type SettingsExportData,
   type ExportSettingsOptions,
   type ImportSettingsOptions,
-} from "./settings-export.js";
+} from "../settings-export.js";
 
 // Helper to create a temporary test environment
 function createTestEnv() {
@@ -57,7 +57,7 @@ describe("settings-export", () => {
 
   beforeEach(async () => {
     env = createTestEnv();
-    const { TaskStore } = await import("./store.js");
+    const { TaskStore } = await import("../store.js");
     store = new TaskStore(env.tempDir, env.globalSettingsDir);
     await store.init();
   });

packages/core/src/__tests__/store.test.ts

@@ -10,8 +10,8 @@ vi.mock("node:child_process", async (importOriginal) => {
   };
 });
 
-vi.mock("./run-command.js", async (importOriginal) => {
-  const mod = await importOriginal<typeof import("./run-command.js")>();
+vi.mock("../run-command.js", async (importOriginal) => {
+  const mod = await importOriginal<typeof import("../run-command.js")>();
   return {
     ...mod,
     runCommandAsync: vi.fn((...args: Parameters<typeof mod.runCommandAsync>) => mod.runCommandAsync(...args)),
@@ -20,16 +20,16 @@ vi.mock("./run-command.js", async (importOriginal) => {
 
 import { execSync } from "node:child_process";
 const mockedExecSync = vi.mocked(execSync);
-import { runCommandAsync } from "./run-command.js";
+import { runCommandAsync } from "../run-command.js";
 const mockedRunCommandAsync = vi.mocked(runCommandAsync);
 
-import { TaskStore, TaskHasDependentsError } from "./store.js";
+import { TaskStore, TaskHasDependentsError } from "../store.js";
 import { appendFile, readFile, writeFile, mkdir, rm, readdir, unlink } from "node:fs/promises";
 import { join } from "node:path";
 import { mkdtempSync, existsSync } from "node:fs";
 import { tmpdir } from "node:os";
-import * as projectMemory from "./project-memory.js";
-import type { Task } from "./types.js";
+import * as projectMemory from "../project-memory.js";
+import type { Task } from "../types.js";
 
 function makeTmpDir(): string {
   return mkdtempSync(join(tmpdir(), "kb-store-test-"));
@@ -9113,7 +9113,7 @@ Task with acceptance criteria
         },
       );
       mockedRunCommandAsync.mockImplementation((...args: Parameters<typeof runCommandAsync>) =>
-        vi.importActual<typeof import("./run-command.js")>("./run-command.js").then((mod) =>
+        vi.importActual<typeof import("../run-command.js")>("../run-command.js").then((mod) =>
           mod.runCommandAsync(...args),
         ),
       );

packages/core/src/__tests__/system-metrics.test.ts

@@ -1,5 +1,5 @@
 import { describe, it, expect, beforeEach, vi } from "vitest";
-import { collectSystemMetrics } from "./system-metrics.js";
+import { collectSystemMetrics } from "../system-metrics.js";
 
 const { checkDiskSpaceMock, cpusMock, totalmemMock, freememMock, uptimeMock } = vi.hoisted(() => ({
   checkDiskSpaceMock: vi.fn(),

packages/core/src/__tests__/task-merge.test.ts

@@ -1,6 +1,6 @@
 import { describe, it, expect } from "vitest";
-import type { StepStatus } from "./types.js";
-import { getTaskCompletionBlocker, getTaskMergeBlocker, isTaskReadyForMerge } from "./task-merge.js";
+import type { StepStatus } from "../types.js";
+import { getTaskCompletionBlocker, getTaskMergeBlocker, isTaskReadyForMerge } from "../task-merge.js";
 
 const baseTask = {
   column: "in-review" as const,

packages/core/src/__tests__/task-priority.test.ts

@@ -6,13 +6,13 @@ import {
   isTaskPriority,
   normalizeTaskPriority,
   sortTasksByPriorityThenAgeAndId,
-} from "./task-priority.js";
+} from "../task-priority.js";
 import {
   DEFAULT_TASK_PRIORITY,
   TASK_PRIORITIES,
   type TaskPriority,
-} from "./types.js";
-import * as core from "./index.js";
+} from "../types.js";
+import * as core from "../index.js";
 
 describe("task-priority", () => {
   it("defines the bounded priority contract in order", () => {