feat(FN-3590): prioritize workspace source entry for bundled plugins and ad

This merge introduces eval score categorization with a new `eval-scoring.ts` module (FN-3601, FN-3390), hardened bundled plugin entry resolution to prioritize workspace source over installed copies (FN-3590), and documented reply-link threading behavior in the mailbox (FN-3598). It also adds mobile

Fusion-Task-Id: FN-3590

scripts/check-test-isolation.mjs

@@ -72,6 +72,13 @@ const RUNTIME_IGNORE_PATTERNS = [
   /^activity-log\.jsonl$/,
   /^settings\.json$/,
   /^logs(?:[\/\\]|$)/,
+  /^tasks(?:[\/\\]|$)/,
+  /^memory(?:[\/\\]|$)/,
+  /^MEMORY\.md$/,
+  /^DREAMS\.md$/,
+  /^\d{4}-\d{2}-\d{2}\.md$/,
+  /^scripts\.json$/,
+  /^update-check\.json$/,
 ];
 
 function isRuntimePath(relPath) {