Commit Graph

269 Commits

Author SHA1 Message Date
gsxdsm
2fd214b4f2 FN-5975: extend archive FTS maintenance coverage
Add archive-database FTS maintenance and document the expanded compaction policy.

- add archive FTS maintenance helpers for optimize, rebuild, size measurement, and row counts
- extend self-healing maintenance to compact and rebuild archived_tasks_fts on a slower archive-specific cadence
- cover archive FTS maintenance with new core and engine tests and update architecture/storage docs

Files changed:
 docs/architecture.md                               |   2 +-
 docs/storage.md                                    |  12 +-
 .../__tests__/archive-db-fts-maintenance.test.ts   | 221 +++++++++++++++++++++
 packages/core/src/archive-db.ts                    |  61 +++++-
 packages/core/src/db.ts                            |  21 +-
 packages/core/src/store.ts                         |  20 ++
 .../src/__tests__/fts-maintenance-archive.test.ts  | 207 +++++++++++++++++++
 packages/engine/src/self-healing.ts                |  80 ++++++++
 8 files changed, 608 insertions(+), 16 deletions(-)

Fusion-Task-Id: FN-5975

Fusion-Task-Lineage: 13645c8c-3126-4d1b-af23-7cab1a8bb276
2026-06-08 10:33:16 -07:00
gsxdsm
3615b0b19d FN-5941: stop todo/in-progress flapping
Prevent scheduler and self-healing churn from bouncing live tasks between todo and in-progress.

- add dispatch oscillation settings, scheduler settle-window tracking, and auto-pause audit/logging for rapid todo↔in-progress cycles
- harden self-healing against reclaiming genuinely active tasks by checking executor activity, grace windows, and heartbeat runs before requeueing
- cover the new reliability invariants with focused engine tests and document the new diagnostics/settings behavior

Files changed:
 docs/architecture.md                               |   1 +
 docs/diagnostics.md                                |   9 +
 docs/settings-reference.md                         |   3 +
 .../core/src/__tests__/settings-parity.test.ts     |   6 +
 packages/core/src/settings-schema.ts               |   6 +
 packages/core/src/types.ts                         |   9 +
 .../todo-inprogress-flapping.test.ts               | 556 +++++++++++++++++++++
 packages/engine/src/__tests__/scheduler.test.ts    |  14 +-
 .../self-healing-in-progress-limbo.test.ts         |   2 +-
 packages/engine/src/__tests__/self-healing.test.ts |   8 +-
 packages/engine/src/run-audit.ts                   |   8 +
 packages/engine/src/scheduler.ts                   | 113 ++++-
 packages/engine/src/self-healing.ts                | 230 +++++++--
 13 files changed, 928 insertions(+), 37 deletions(-)

Fusion-Task-Id: FN-5941

Fusion-Task-Lineage: babdd85e-d04c-47ca-901c-db692b2874bf
2026-06-07 18:51:47 -07:00
gsxdsm
294209f64b FN-5943: maintain tasks FTS5 indexes automatically
Keep the tasks FTS5 index compact and self-healing during routine maintenance.

- add FTS5 trigger helpers, index sizing utilities, and a schema migration that skips no-op searchable-field rewrites
- run merge/optimize/rebuild maintenance from self-healing with thresholds, cadence, and run-audit logging
- add focused FTS maintenance coverage and update storage/architecture docs for the new behavior

Files changed:
 docs/architecture.md                               |   1 +
 docs/storage.md                                    |  14 ++
 packages/core/src/__tests__/db-migrate.test.ts     |  50 ++--
 packages/core/src/__tests__/db.test.ts             |  84 +++----
 packages/core/src/__tests__/goals-schema.test.ts   |   2 +-
 packages/core/src/__tests__/insight-store.test.ts  |  10 +-
 .../src/__tests__/merge-request-record.test.ts     |   2 +-
 packages/core/src/__tests__/mission-store.test.ts  |   2 +-
 packages/core/src/__tests__/run-audit.test.ts      |   2 +-
 .../src/__tests__/store-archive-search.test.ts     |  33 +++
 .../core/src/__tests__/store-merge-queue.test.ts   |   2 +-
 packages/core/src/__tests__/task-documents.test.ts |   2 +-
 packages/core/src/archive-db.ts                    |   6 +-
 packages/core/src/db.ts                            | 162 ++++++++++---
 packages/core/src/store.ts                         |  16 ++
 .../engine/src/__tests__/fts-maintenance.test.ts   | 268 +++++++++++++++++++++
 packages/engine/src/self-healing.ts                |  70 ++++++
 .../src/store/__tests__/roadmap-store.test.ts      |   4 +-
 18 files changed, 622 insertions(+), 108 deletions(-)

Fusion-Task-Id: FN-5943

Fusion-Task-Lineage: 9a851ede-95ee-4b76-bc34-737912f0e3fc
2026-06-07 18:51:46 -07:00
gsxdsm
1f68348441 merge: main (CLI agent interface #1446) — renumber workflow_settings migration to 112 behind main's cli_sessions(110)/adapter(111), full-workspace literal sweep, i18n union 2026-06-05 16:18:39 -07:00
gsxdsm
10acf17c6e feat(engine): cli-agent resume coordinator and self-healing integration (U8)
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-05 00:16:14 -07:00
gsxdsm
e8e54bf343 feat(engine): per-task effective workflow settings — resolver, two-tier entry merge, fallback alignment 2026-06-04 22:37:51 -07:00
gsxdsm
45ce189548 fix(core): transitionPending recovery sweep, flag-off evacuation, recoveryRehome on self-healing moves (#1401 #1409 #1411) 2026-06-04 07:14:41 -07:00
gsxdsm
c82cdb281c FN-5944: stop redundant run-audit re-emission
Deduplicate unchanged scheduler and self-healing audit emissions while preserving transition visibility.

- suppress repeated queued-concurrency audits until the limiting gate signature changes or clears
- suppress repeated overlap-priority inversion audits until the blocker changes or overlap returns
- suppress repeated meta auto-archive skip and integrity-warning audits until their persisted reasons change
- update reliability tests and architecture/settings docs for the new transition-only audit cadence

Files changed:
 docs/architecture.md                               | 12 +--
 docs/settings-reference.md                         |  2 +-
 .../integrity-warning-persisted-dedup.test.ts      | 12 ++-
 .../scheduler-overlap-priority-inversion.test.ts   | 60 +++++++++++++-
 packages/engine/src/__tests__/scheduler.test.ts    | 13 ++-
 .../self-healing-meta-archive-guards.test.ts       | 45 +++++++++++
 packages/engine/src/scheduler.ts                   | 59 +++++++++++---
 packages/engine/src/self-healing.ts                | 94 +++++++++++++++++-----
 8 files changed, 243 insertions(+), 54 deletions(-)

Fusion-Task-Id: FN-5944

Fusion-Task-Lineage: f8fe6adf-1501-49b7-b04c-ff38376957f0
2026-06-03 22:31:23 -07:00
gsxdsm
d1cd8b6ed8 merge main: unify CONCEPTS.md vocabularies and reconcile core exports
Both sides bootstrapped CONCEPTS.md — kept main's broader structure (Missions,
Merge lifecycle, CE sessions) and folded the branch-group vocabulary into its
Merge-lifecycle cluster (enriched Shared branch group + Self-healing sweep;
added Branch assignment mode, Landed, Group promotion). Union-merged core
index/store imports; took main's AGENTS.md discoverability wording. Also adds
execFile to the two child_process test mocks that only stubbed exec (the
coordinator's argv-based git calls now require it).
2026-06-03 15:57:41 -07:00
gsxdsm
e00bc0235b Address PR review feedback (#1356)
- Add behavior-level tests for the shared merge-enqueue funnel
  (enqueueEligibleInReviewTasks) with a Surface Enumeration of all
  in-review entry surfaces, per review
- Seed real stale in-review fixtures in the FN-5147 no-mutation
  regression block so sweeps enumerate candidates and the assertions
  are non-vacuous
- Keep per-task auto-merge gating uniform across reclaim/contamination
  candidate columns: the suggested in-review-only scoping broke the
  FN-5704 regression contract (reclaim short-circuits when autoMerge
  is off); documented the tension in code comments and the learning doc
- Drop hardcoded commit hash from the learning doc
2026-06-03 13:08:06 -07:00
gsxdsm
ad468813d5 fix(engine): honor per-task auto-merge override when global auto-merge is off
Tasks with autoMerge explicitly enabled never auto-merged when the
project-level setting was disabled: the merge enqueue gate
(allowInReviewMergeProcessing) and all 19 in-review self-healing sweeps
checked only settings.autoMerge, and the board stall-signal hydration
passed the raw global into the diagnostic gates.

Introduce allowsAutoMergeProcessing(task, settings) in core — additive
relative to the global setting so configs with global auto-merge ON are
unchanged (explicit autoMerge:false tasks still flow to the merger's
manual-required parking) — and use it at the enqueue gate, every
self-healing sweep, and the store's stall/stalled signal contexts.
2026-06-03 10:18:24 -07:00
gsxdsm
cad44b1f56 fix(FN-5846): commit-ownership-anchor already-merged attribution (U3)
Audit of all shared-member merge + self-healing finalize paths: routing,
merger finalize-success, and the 6 self-healing recovery paths were already
group-branch-safe (FN-5846). Found a residual of the 2026-05-23 lost-work
incident bug #2: already-merged-detector's ancestry strategy used bare
git log --grep first-hit, and the ownership regex made the conventional scope
optional (bare 'feat:' matched). Anchor attribution on trailers or task-scoped
subject; scan candidates instead of accepting the first grep hit. Adds real-git
characterization tests.
2026-06-03 09:40:30 -07:00
gsxdsm
d72cb2ab2b FN-5911: move agent logs to per-task JSONL storage
Store agent logs in per-task JSONL files instead of the legacy SQLite table.

- add a file-backed agent log store with JSONL append/read/prune helpers and task-scoped source refs
- migrate legacy SQLite agentLogEntries data into task files, rewrite goal citation references, and preserve soft-deleted logs for forensics
- update task store, settings, docs, dashboard route coverage, and add regression tests for migration, retention, and log access

Files changed:
 .changeset/fn-5911-agent-log-jsonl.md              |   5 +
 AGENTS.md                                          |   2 +-
 docs/diagnostics.md                                |   2 +-
 docs/settings-reference.md                         |   2 +
 docs/soft-delete-verification-matrix.md            |   7 +-
 docs/storage.md                                    |   8 +-
 .../src/__tests__/agent-log-file-store.test.ts     | 123 ++++++
 .../core/src/__tests__/agent-log-migration.test.ts | 186 +++++++++
 .../core/src/__tests__/agent-log-retention.test.ts | 208 ++++++++++
 packages/core/src/__tests__/db-migrate.test.ts     |  14 +-
 packages/core/src/__tests__/db.test.ts             |  39 +-
 .../src/__tests__/goal-citations-store.test.ts     |  38 +-
 packages/core/src/__tests__/goals-schema.test.ts   |   2 +-
 packages/core/src/__tests__/insight-store.test.ts  |  10 +-
 .../src/__tests__/merge-request-record.test.ts     |   2 +-
 packages/core/src/__tests__/mission-store.test.ts  |   2 +-
 packages/core/src/__tests__/run-audit.test.ts      |   2 +-
 packages/core/src/__tests__/secrets-schema.test.ts |   6 +-
 .../src/__tests__/soft-delete-agent-logs.test.ts   |  71 ++--
 .../src/__tests__/store-agent-log-file.test.ts     |  91 +++++
 .../core/src/__tests__/store-merge-queue.test.ts   |   2 +-
 packages/core/src/__tests__/store-test-helpers.ts  |  43 +-
 packages/core/src/__tests__/store-upsert.test.ts   |  37 +-
 packages/core/src/__tests__/task-documents.test.ts |   2 +-
 packages/core/src/agent-log-constants.ts           |  25 ++
 packages/core/src/agent-log-file-store.ts          | 267 ++++++++++++
 packages/core/src/db.ts                            |  51 ++-
 packages/core/src/settings-schema.ts               |   1 +
 packages/core/src/store.ts                         | 453 ++++++++++++---------
 packages/core/src/types.ts                         |  10 +-
 .../__tests__/agent-log-routes.integration.test.ts |  48 +++
 .../src/__tests__/evaluator-evidence.test.ts       |  47 ++-
 packages/engine/src/self-healing.ts                |  12 +
 .../src/store/__tests__/roadmap-store.test.ts      |   4 +-
 34 files changed, 1477 insertions(+), 345 deletions(-)

Fusion-Task-Id: FN-5911

Fusion-Task-Lineage: 07c42f3a-87cf-4558-8f01-ac8460b5558b
2026-06-03 01:10:18 -07:00
gsxdsm
3b9ff42073 FN-5901: reap stale mission validator runs
Add self-healing recovery for stale mission validator runs left behind after execution ownership disappears.

- add mission-store support to find and reap stale running validator runs, preserving terminal error status and resetting eligible features to needs_fix
- teach the mission execution loop and self-healing maintenance sweep to skip live validations, reap abandoned runs, record audit events, and avoid double-completing runs
- extend regression coverage, mission docs, architecture notes, and add a published-package changeset for the new recovery behavior

Files changed:
 .changeset/fn-5901-validator-run-reaper.md         |   7 +
 AGENTS.md                                          |   1 +
 docs/architecture.md                               |   2 +
 docs/missions.md                                   |  26 ++-
 packages/core/src/__tests__/mission-store.test.ts  |  99 +++++++++
 packages/core/src/mission-store.ts                 |  91 ++++++++
 packages/engine/src/__tests__/mission-execution-loop.test.ts   | 232 +++++++++++++++++++++
 packages/engine/src/__tests__/reliability-interactions/mission-validator-run-reaper.test.ts           | 181 ++++++++++++++++
 packages/engine/src/mission-execution-loop.ts      | 102 +++++++--
 packages/engine/src/runtimes/in-process-runtime.ts |   8 +-
 packages/engine/src/self-healing.ts                |  22 ++
 11 files changed, 746 insertions(+), 25 deletions(-)

Fusion-Task-Id: FN-5901

Fusion-Task-Lineage: 87eb2f3f-fc31-4e0a-b0fc-b771f6dc48a3
2026-06-02 15:33:31 -07:00
gsxdsm
8156382d76 FN-5889: suppress post-done continuation wedges
Keep completed post-done continuation errors from wedging review tasks in a failed state.

- route step-session non-continuable continuation errors through the executor recovery path before marking tasks failed
- add self-healing recovery and run-audit events for in-review tasks already wedged by post-done non-continuable errors
- extend reliability coverage and architecture/backstop docs for the new post-done wedge handling

Files changed:
 AGENTS.md                                          |   1 +
 docs/architecture.md                               |   3 +-
 packages/engine/src/__tests__/reliability-interactions/post-done-continuation-no-wedge.test.ts        | 131 ++++++++++++++++++++-
 packages/engine/src/executor.ts                    |  11 +-
 packages/engine/src/run-audit.ts                   |   2 +
 packages/engine/src/self-healing.ts                |  97 ++++++++++++++-
 6 files changed, 236 insertions(+), 9 deletions(-)

Fusion-Task-Id: FN-5889

Fusion-Task-Lineage: c22716f2-cddb-4c98-ac87-0282017e7c82
2026-06-02 11:03:18 -07:00
gsxdsm
0006408181 FN-5874: persist fast-forward merge details
Persist merge metadata for AI fast-forward landings and done-task recovery.

- capture landed files and shortstat metadata from the single landed commit in the AI merge finalizer
- persist mergeDetails and modifiedFiles for landed squash commits, and record commit associations without setting no-op attribution flags
- extend done-task self-healing to backfill merge metadata when baseCommitSha exists but mergeDetails is empty
- add reliability and self-healing coverage for landed-file persistence, empty AI merges, and recovery behavior

Files changed:
 AGENTS.md                                          |   1 +
 .../ai-merge-ff-landed-files.test.ts               | 150 +++++++++++++++++++++
 packages/engine/src/__tests__/self-healing.test.ts |  76 +++++++++++
 packages/engine/src/merger-ai.ts                   |  40 +++++-
 packages/engine/src/merger.ts                      |  30 ++++-
 packages/engine/src/self-healing.ts                |  11 +-
 6 files changed, 303 insertions(+), 5 deletions(-)

Fusion-Task-Id: FN-5874

Fusion-Task-Lineage: a407910c-9ce8-4049-86ef-e80f045c981a
2026-06-02 08:35:47 -07:00
gsxdsm
f9e551317f Harden fusion.db against recurring corruption
Root cause: node:sqlite SIGSEGVs inside pager_write leave the B-tree
malformed in a way that still opens but fails integrity checks; large
operational-log tables widen the write window where the crash strikes.

- backup: verify every copy with PRAGMA quick_check, quarantine corrupt
  copies as *.corrupt, and never rotate out the last verified-good backup
- db: add Database.recoverIfCorrupt() startup guard (wired into
  TaskStore.init, disk-backed only, opt out via FUSION_DISABLE_DB_AUTORECOVER)
  that rebuilds a malformed db via sqlite3 .recover, preserving the corrupt
  original; also fixes the latent `.recover main` invalid-option bug that made
  recoverDatabase() always fail
- db: drop lost_and_found* scratch tables on init; add pruneOperationalLogs()
- settings: add operationalLogRetentionDays (default 30, 0 = off) and prune
  activityLog/agentLogEntries/runAuditEvents/agentHeartbeats during maintenance
- dashboard: expose retention in Settings -> Backups -> Database Maintenance

Tests: backup 59/59, db 135/135 (incl. real corrupt->recover->reopen),
self-healing cleanup/corruption 10/10, settings 77/77, SettingsModal 460/460.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-01 21:55:10 -07:00
gsxdsm
e561290174 FN-5846: route shared-group member finalization to shared branch
Ensure shared branch-group members keep their routed shared-branch target through merge finalization and recovery.

- ignore a shared member's default-base branch when resolving branch-group merge routing
- reroute merge-confirmed fast paths and self-healing recovery flows to the branch-group integration branch
- stamp merge target metadata, record member landings, and add regression coverage plus architecture/changeset updates

Files changed:
 .changeset/fn-5846-shared-group-merge-routing.md   |   5 +
 docs/architecture.md                               |   4 +-
 packages/engine/src/__tests__/group-merge-coordinator.test.ts  |  26 +++
 packages/engine/src/__tests__/reliability-interactions/shared-branch-group-lifecycle.test.ts  |  73 +++++--
 packages/engine/src/group-merge-coordinator.ts     |  11 +-
 packages/engine/src/project-engine.ts              |  49 ++++-
 packages/engine/src/self-healing.ts                | 212 ++++++++++++++++++++-
 7 files changed, 357 insertions(+), 23 deletions(-)

Fusion-Task-Id: FN-5846

Fusion-Task-Lineage: c8fbf8b8-3cbe-4ee5-96d9-9040bd4f0df5
2026-06-01 20:19:37 -07:00
gsxdsm
35ce9bd244 FN-5819: allow shared-group members to merge into group branch with auto-merge off
Allow shared branch-group members to continue member→group integration even when project auto-merge is disabled.

- add core helper to detect shared branch-group member integrations and export it
- update engine in-review enqueue/handoff/startup flows to permit shared-member integration while still honoring global/engine pause gates
- keep self-healing from pulling shared-member in-review tasks backward during auto-merge-off maintenance
- expand project-engine and reliability-interaction tests for shared-member autoMerge-off behavior and add FN-5819 backstop docs updates

Files changed:
 AGENTS.md                                          |  2 +
 docs/architecture.md                               |  3 +-
 packages/core/src/__tests__/task-merge.test.ts     | 37 +++++++++
 packages/core/src/index.ts                         |  1 +
 packages/core/src/task-merge.ts                    | 13 +++
 packages/engine/src/__tests__/project-engine.test.ts    | 64 ++++++++++++++
 packages/engine/src/__tests__/reliability-interactions/branch-group-merge-routing.test.ts             | 48 +++++++++++
 packages/engine/src/__tests__/reliability-interactions/shared-group-member-integration.test.ts        | 97 ++++++++++++++++++++++
 packages/engine/src/project-engine.ts              | 35 ++++----
 packages/engine/src/self-healing.ts                |  3 +-
 10 files changed, 284 insertions(+), 19 deletions(-)

Fusion-Task-Id: FN-5819

Fusion-Task-Lineage: b5eeced7-7c47-4573-9ab4-ca577bec65e1
2026-06-01 02:42:36 -07:00
gsxdsm
327f0a9a4f FN-5818: fix shared-branch-group execution to use per-task working branches
Ensure shared branch-group flows consistently derive and acquire per-task working branches.

- update engine merge/executor/scheduler/self-healing paths to resolve task-scoped working branch names instead of shared branch-group names
- adjust worktree acquisition and already-merged detection logic to use the corrected branch resolution
- add regression coverage for shared-branch-group working-branch behavior, worktree acquisition, and worktree name derivation
- add a patch changeset for @runfusion/fusion

Files changed:
 .changeset/fn-5818-shared-branch-working-branch.md |  5 ++
 .../shared-branch-group-working-branch.test.ts     | 53 ++++++++++++++++++++++
 .../src/__tests__/worktree-acquisition.test.ts     | 52 +++++++++++++++++++++
 .../engine/src/__tests__/worktree-names.test.ts    | 20 +++++++-
 packages/engine/src/already-merged-detector.ts     |  6 +--
 packages/engine/src/executor.ts                    | 10 ++--
 packages/engine/src/merger-ai.ts                   |  4 +-
 packages/engine/src/merger.ts                      | 16 +++----
 packages/engine/src/scheduler.ts                   |  6 +--
 packages/engine/src/self-healing.ts                | 12 ++---
 packages/engine/src/worktree-acquisition.ts        |  4 +-
 packages/engine/src/worktree-names.ts              |  9 +++-
 12 files changed, 166 insertions(+), 31 deletions(-)

Fusion-Task-Id: FN-5818

Fusion-Task-Lineage: c7eb1ec4-971a-49ad-9156-5c0349c629aa
2026-06-01 01:37:25 -07:00
Phil Larson
a7bd44ca96 fix(engine): split stuck requeue fallback handling 2026-05-31 10:57:54 -07:00
Phil Larson
5a163ce07a fix(engine): resolve stuck-loop requeue review feedback 2026-05-31 10:50:58 -07:00
Phil Larson
5861884456 fix(engine): requeue incomplete stuck-loop exhaustion 2026-05-31 08:35:36 -07:00
Phil Larson
ab38ee09e0 fix(engine): park incomplete stuck-loop exhaustions 2026-05-30 20:21:35 -07:00
gsxdsm
5396730033 FN-5755: harden mission validation recovery flow
Ensure mission feature assertions recover and validate consistently across startup and periodic maintenance.

- add FN-5755 changeset and AGENTS reliability backstop note
- document canonical zero-assertion auto-pass and assertion validation lifecycle updates in missions docs
- expand mission execution loop and reliability interaction tests for startup recovery, periodic replay, and idempotency
- wire self-healing maintenance to replay active mission validation recovery via runtime callback

Files changed:
 .../fn-5755-mission-validation-end-to-end.md       |  5 ++
 AGENTS.md                                          |  1 +
 docs/missions-completion-contract.md               | 15 ++--
 docs/missions.md                                   |  4 +-
 .../src/__tests__/mission-execution-loop.test.ts   | 88 +++++++++++++++++++++-
 .../mission-validation-trigger-gap.test.ts         | 42 ++++++++++-
 packages/engine/src/runtimes/in-process-runtime.ts |  6 ++
 packages/engine/src/self-healing.ts                | 11 +++
 8 files changed, 159 insertions(+), 13 deletions(-)

Fusion-Task-Id: FN-5755

Fusion-Task-Lineage: e54ac4dc-7b8c-4fc9-8cd6-18702708546f
2026-05-30 17:45:11 -07:00
gsxdsm
0e0b17f3c4 FN-5754: re-triage stranded features in active mission slices
Ensure active mission slices recover stranded features by linking or auto-triaging them during scheduler and self-healing reconciliation.

- Extend mission feature reconciliation to auto-triage defined features in active slices when mission autopilot/auto-advance is enabled and no linked task can be found.
- Emit a new mission:stranded-feature-triaged audit event whenever stranded features are linked or triaged, and wire reconciliation into self-healing maintenance runs.
- Add regression coverage for scheduler and reliability interactions, and document the new backstop in AGENTS and mission docs.

Files changed:
 AGENTS.md                                          |   1 +
 docs/missions-completion-contract.md               |   1 +
 docs/missions.md                                   |   1 +
 .../mission-stranded-feature-retriage.test.ts      | 160 +++++++++++++++++++++
 packages/engine/src/__tests__/scheduler.test.ts    | 155 ++++++++++++++++++++
 packages/engine/src/run-audit.ts                   |   1 +
 packages/engine/src/runtimes/in-process-runtime.ts |   1 +
 packages/engine/src/scheduler.ts                   |  64 ++++++++-
 packages/engine/src/self-healing.ts                |  11 ++
 9 files changed, 394 insertions(+), 1 deletion(-)

Fusion-Task-Id: FN-5754

Fusion-Task-Lineage: 6b29754a-2fdf-4528-aa43-af294c4210df
2026-05-30 16:47:15 -07:00
gsxdsm
76e3cde532 Merge pull request #1202 from plarson/fix/skip-blocked-todo-reclaim
fix: skip blocked todo tasks during self-owned reclaim
2026-05-30 16:33:52 -07:00
Phil Larson
a7347ad59e fix: skip blocked todo tasks during self-owned reclaim 2026-05-30 14:50:22 -07:00
gsxdsm
20c1c3261e FN-5741: persist merge-request handoff shadow contract
Introduce Phase 1 write-only persistence for merge-request handoff acceptance across core and engine paths.

- add persisted merge-request record types, schema/settings plumbing, and store write-path support
- update merger/executor/self-healing/run-audit flows to emit and consume the handoff-accepted shadow marker
- expand core/engine/roadmap tests and docs to cover the new merge-request shadow contract
- add a patch changeset for @runfusion/fusion for this bundled package update

Files changed:
 .changeset/fn-5741-merge-request-shadow.md         |   5 +
 AGENTS.md                                          |   1 +
 docs/architecture.md                               |   2 +
 docs/settings-reference.md                         |   1 +
 packages/core/src/__tests__/db-migrate.test.ts     |  12 +-
 packages/core/src/__tests__/db.test.ts             |  34 ++--
 packages/core/src/__tests__/goals-schema.test.ts   |   2 +-
 packages/core/src/__tests__/insight-store.test.ts  |  10 +-
 .../src/__tests__/merge-request-record.test.ts     |  97 +++++++++++
 packages/core/src/__tests__/mission-store.test.ts  |   2 +-
 packages/core/src/__tests__/run-audit.test.ts      |   2 +-
 packages/core/src/__tests__/secrets-schema.test.ts |   6 +-
 .../core/src/__tests__/settings-parity.test.ts     |   3 +
 .../core/src/__tests__/store-merge-queue.test.ts   |   2 +-
 packages/core/src/__tests__/task-documents.test.ts |   2 +-
 packages/core/src/db.ts                            |  49 +++++-
 packages/core/src/index.ts                         |   4 +-
 packages/core/src/settings-schema.ts               |  30 ++++
 packages/core/src/store.ts                         | 189 ++++++++++++++++++++-
 packages/core/src/types.ts                         |  37 ++++
 .../src/__tests__/merger-merge-lifecycle.test.ts   |  54 ++++++
 .../merge-request-shadow-handoff.test.ts           |  74 ++++++++
 packages/engine/src/executor.ts                    |  15 +-
 packages/engine/src/merger.ts                      |  37 ++++
 packages/engine/src/run-audit.ts                   |   1 +
 packages/engine/src/self-healing.ts                |  16 +-
 .../src/store/__tests__/roadmap-store.test.ts      |   4 +-
 27 files changed, 646 insertions(+), 45 deletions(-)

Fusion-Task-Id: FN-5741

Fusion-Task-Lineage: 3fec14c3-47ff-4f14-bc02-24021518c992
2026-05-30 14:42:50 -07:00
gsxdsm
0dbb1cd6f9 FN-5704: escalate self-owned execution limbo instead of endless resume
Escalate reclaimable in-progress resume limbo into an explicit failure path to stop infinite self-healing loops.

- add resume-limbo escalation handling in self-healing/executor flow so self-owned stuck execution is failed and surfaced
- extend core task/run-audit types and retry-reset/store behavior to persist and expose the new escalation state
- add reliability interaction coverage for reclaim self-owned resume limbo escalation and update related schema/store/CLI/plugin tests and docs

Files changed:
 AGENTS.md                                          |   1 +
 docs/architecture.md                               |   2 +
 packages/cli/src/commands/__tests__/task.test.ts   |   2 +
 packages/core/src/__tests__/db-migrate.test.ts     |  12 +-
 packages/core/src/__tests__/db.test.ts             |  34 ++---
 packages/core/src/__tests__/goals-schema.test.ts   |   2 +-
 packages/core/src/__tests__/insight-store.test.ts  |  10 +-
 packages/core/src/__tests__/mission-store.test.ts  |   2 +-
 packages/core/src/__tests__/run-audit.test.ts      |   2 +-
 packages/core/src/__tests__/secrets-schema.test.ts |   6 +-
 .../core/src/__tests__/store-merge-queue.test.ts   |   2 +-
 packages/core/src/__tests__/task-documents.test.ts |   2 +-
 packages/core/src/db.ts                            |  13 +-
 packages/core/src/manual-retry-reset.ts            |   1 +
 packages/core/src/store.ts                         |  37 ++++-
 packages/core/src/types.ts                         |  11 ++
 ...laim-self-owned-resume-limbo-escalation.test.ts | 168 +++++++++++++++++++++
 packages/engine/src/executor.ts                    |   5 +
 packages/engine/src/run-audit.ts                   |   1 +
 packages/engine/src/self-healing.ts                |  72 +++++++++
 .../src/store/__tests__/roadmap-store.test.ts      |   4 +-
 21 files changed, 345 insertions(+), 44 deletions(-)

Fusion-Task-Id: FN-5704

Fusion-Task-Lineage: c8f73d16-d95b-450f-a514-e7d3c2f7aebe
2026-05-29 20:05:14 -07:00
Phil Larson
6b57e7cbf6 fix(engine): resume execution after review revise 2026-05-29 12:57:53 -07:00
gsxdsm
e75c4dae28 fix(FN-5627): suppress ntfy notifications for transient merge failures the engine auto-recovers
Even with FN-5627's merger TOCTOU fix + transient-failure self-healing
sweep + safety-fallback auto-prerebase landed, the merger can still hit
transient failure classes (lease handoff races, brief same-SHA non-FF
advances) for tasks whose branches are particularly out-of-sync. The
self-healing sweep auto-recovers them within bounded budget \u2014 but each
individual failure cycle was firing a ntfy alarm before the recovery
cleared the failed state, producing user-facing alarm spam for tasks
that were never actually stuck.

Two layers of fix:

1. NotificationService.handleTaskUpdated now classifies task.error via
   the new shared classifyTransientMergeError helper before scheduling
   the deferred failure notification. Transient classes
   (lease-handoff-target-not-queued, spurious-concurrent-advance-same-sha)
   get logged as suppressed and never schedule a ntfy timer.

2. Defense-in-depth: fireDeferredFailureNotification re-classifies the
   error at dispatch time, so a failure scheduled before the suppression
   landed on a newer cycle still suppresses if the error matches a
   transient class.

The classifier itself moved from self-healing.ts to a new logger-free
transient-merge-error-classifier.ts module so consumers in
NotificationService don't pull createLogger through the import chain and
break test mocks of ../logger.js (per project-memory rule about new
modules using createLogger). self-healing.ts re-exports the symbol for
backward compatibility.

Log prefix for the recovery actions also changed from
'[FN-5627] Auto-recovering...' to 'Auto-recovered:' so that
NotificationService.maybeSuppressTransientFailedNotification's existing
/^Auto-recovered:/ log-prefix check cancels any already-scheduled failure
notification when the sweep runs mid-grace-window.

Tests (3 new):
- transient lease-handoff-target-not-queued failure NOT notified
- transient spurious-concurrent-advance-same-sha failure NOT notified
- genuine different-SHAs concurrent-advance still notifies (control)

Engine suite: 6166 tests pass.

Fusion-Task-Id: FN-5627
2026-05-28 15:39:23 -07:00
gsxdsm
6b27ab5aab fix(FN-5627): default auto-prerebase to fire when branch >=1 commit behind
decideAutoPrerebase() previously defaulted prerebaseDivergenceThreshold
to 0, which meant the threshold path NEVER fired unless the user
explicitly set a positive value. Only hot-file matches could trigger
prerebase.

The result: tasks whose branch was started against an older main tip
(because other tasks landed concurrently) skipped prerebase, built their
squash commit against the stale base, and then failed at git update-ref
because the squash didn't descend from current main. The merger correctly
detected this as non-fast-forward and threw
IntegrationBranchConcurrentAdvanceError, but with both 'expected' and
'observed' SHAs set to current main tip \u2014 because observedCurrentSha was
captured from the pre-update rev-parse, not post-failure. This produced
the misleading 'expected X, observed X' same-SHA error signature that
stranded FN-5632 stuck at mergeRetries=3 after the FN-5627 merger fix
and engine restart.

New default: prerebaseDivergenceThreshold = 1. Any branch behind by at
least 1 commit auto-rebases before squash. Users who want the legacy
never-fire behavior can explicitly set prerebaseDivergenceThreshold = 0.
Threshold comparison also changed from > to >= so an explicit threshold
of N rebases at N+ commits behind instead of N+1+.

The self-healing classifier comment for spurious-concurrent-advance-same-sha
is updated to note the signature can come from either pre-FN-5627
misclassification OR the legitimate post-FN-5627 non-FF path; the
auto-recovery sweep is unchanged because both cases self-heal cleanly
once prerebase fires on the retry.

Tests (3 new):
- Default threshold (undefined) fires at 1 commit behind
- Explicit threshold = 0 stays as opt-out (never fire on commit-count)
- Default threshold doesn't fire when branch is up-to-date

Engine suite: 6160 tests pass.

In-flight: FN-5632 manually SQL-reset to mergeRetries=0 / status=null
once more so the next merger tick (after engine restart picks up this
code) auto-prerebases and lands the work. Future occurrences self-recover.

Fusion-Task-Id: FN-5627
2026-05-28 14:21:38 -07:00
gsxdsm
5768d5ec45 feat(FN-5627): self-heal transient merge failures stuck at mergeRetries=3
After the FN-5627 merger fix (b2d547eae, 230f6f45b) landed, two in-review
tasks (FN-5628, FN-5632) remained stuck at mergeRetries=3 with
status=failed because the merger correctly identified transient failure
classes but had no auto-recovery path \u2014 the AUTO_MERGE_COOLDOWN_MS reset
takes hours and gives up too easily.

Failure classes covered:
- lease-handoff-failed: target-not-queued (FN-5353/FN-5363 race where the
  merge queue lease was cleared between enqueue and handoff acquisition).
- Legacy same-SHA spurious 'Integration branch X advanced concurrently
  (expected SHA, observed SHA)' errors from pre-FN-5627 code paths.

Implementation:
- New MergeDetails.transientRecoveryCount field tracks per-task recovery
  attempts, bounded by MAX_TRANSIENT_MERGE_RECOVERIES = 2.
- New classifyTransientMergeError() string matcher in self-healing.ts
  identifies recoverable classes by error pattern. Returns null for
  genuine merge failures (verification, conflicts, real concurrent
  advances with different SHAs).
- SelfHealingManager.recoverTransientMergeFailures() sweep finds
  matching in-review tasks, resets mergeRetries=0, clears status/error,
  increments recovery count, re-enqueues via requeueForAutoMerge.
- Wired into BOTH startup recovery and periodic Batch 2 maintenance loop.
- Emits merger:transient-failure-auto-recovered (recovered) and
  merger:transient-failure-budget-exhausted (terminal) audit events.

No-op when autoMerge=false, requeueForAutoMerge not wired, or pause
active. Repeat-suppression on budget-exhausted emit via error marker
[transient-recovery-budget-exhausted] to prevent log spam.

Tests (6 new):
- target-not-queued recovery path
- spurious-concurrent-advance-same-sha recovery path (legacy)
- genuine concurrent-advance (different SHAs) NOT recovered
- non-transient failures NOT recovered (verification, conflicts)
- budget exhaustion emits marker once, no further requeue
- autoMerge=false no-op

Engine suite: 6157 tests pass (6 new).

In-flight: FN-5628 and FN-5632 were manually reset via SQL so the
already-running engine (which has the FN-5627 merger fix) can re-attempt
their merges before this self-healing path lands and reloads. Future
occurrences self-recover.

Fusion-Task-Id: FN-5627
2026-05-28 13:53:15 -07:00
gsxdsm
390bd7f923 perf(dashboard): cache gh CLI checks and defer SQLite integrity scan
Cold-start dashboard responsiveness went from ~99s to ~6-11s. CPU profiling
identified two synchronous-spawn hotspots blocking the event loop:

- `GitHubTrackingReconciler` scanned up to 200 done tasks per startup,
  each call into `getIssue` invoking `isGhAvailable()` + `isGhAuthenticated()`
  via `execFileSync`. `gh auth status` makes a network roundtrip, so 400
  sync spawns ≈ 71s of pure event-loop blocking (69% of cold-start CPU).
  Memoized both checks with a 60s TTL; `resetGhAvailabilityCache()` is
  exported for login/logout flows that need immediate invalidation.

- `PRAGMA integrity_check(100)` walks every page of the SQLite file (~7s
  per database, multiple DBs × projects). The deferred check was scheduled
  3s after init — right in the responsiveness-critical window. Pushed to
  60s so the user is already interacting before it runs; check itself is
  unchanged.

Also yields the event loop between major InProcessRuntime init phases and
between self-healing recovery steps (34 per project), defers orphan-task
AI agent resumption by 30s (env-overridable, auto-zero under Vitest), and
ships an opt-in `FUSION_TRACE_EL_LAG=/path/to/file` event-loop lag tracer
that diagnosed all of the above.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-26 23:41:28 -07:00
gsxdsm
4e4830f592 fix(engine): harden merge finalize SQLite bind and recover bare merge subjects
Two compounding bugs surfaced as `feat(FN-XXXX): merge fusion/fn-XXXX`
commits landing on main:

1. The verification-fix finalize path could bind `undefined` to SQLite
   parameter 4 (`commitSha`) of `upsertTaskCommitAssociation` under the
   parallel-attempt race, failing the merge over a denormalization
   write after the commit had already landed. Centralized both
   duplicated callsites into a helper that validates each git output
   before binding.

2. Four self-healing/aiMergeTask recovery sites copied
   `classification.commit.subject` verbatim into
   `mergeDetails.mergeCommitMessage`, persisting the tier-3
   `merge ${branch}` fallback when it ended up on the landed commit.
   New `regenerateBareMergeSubject` helper detects the bare pattern
   and rebuilds a descriptive subject via the AI summarizer. Cosmetic
   only — the git commit is not amended.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-26 21:57:31 -07:00
gsxdsm
88c465cfc0 fix(ci,engine): repair test sharding, case-variant ambiguity detection, post-merge CI
Test shards 3 and 4 were silently failing on every open PR because vitest's
CLI parser was treating `--shard X/Y` as positional file filters whenever the
arg arrived after a `--` separator. Removing the `--` in ci-test-shard.mjs
restores per-shard slicing; verified locally that shard 1/4 and 2/4 now run
distinct subsets.

The two consistently-failing engine tests:

1. self-healing in-review-branch-rebind ambiguous case-variant detection:
   dedup keyed on lowercase branch name collapsed two physically distinct
   refs (allowed on Linux ext4) into one candidate, so the "applied" path
   ran instead of "ambiguous-candidates". Dedup now keys on the resolved
   SHA — macOS APFS still collapses (same ref, same SHA), Linux keeps both
   (distinct SHAs) and the ambiguity skip path fires as designed.

2. worktree-acquisition resume-misbinding spy: the production
   verifyResumeBranchNotMisbound returns early when `git merge-base HEAD main`
   fails, which is exactly what happens on shallow checkouts. Bumping the
   test-shards checkout to fetch-depth: 0 makes CI mirror the local git
   state these engine tests rely on.

Also adds `push: branches: [main]` to PR Checks so regressions like this
(which slipped into v0.33.0 with no post-merge run) go red immediately
on landing instead of being discovered on the next PR.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-25 10:24:21 -07:00
gsxdsm
9b7e87667b feat(FN-5566): add soft-delete cleanup sweep for blocker residue
Added soft-delete reliability sweeps and guardrails to prevent blocker residue from persisting across delete operations, including column drift detection, deleted row sweep guards, and in-progress delete reconciliation, with comprehensive test coverage and documentation updates to the soft-delete ve

Fusion-Task-Id: FN-5566

Co-authored-by: Fusion (runfusion.ai) <noreply@runfusion.ai>
Fusion-Task-Id: FN-5566
2026-05-23 21:54:07 -07:00
gsxdsm
acf3502a25 fix(merger): refuse no-op finalize when modifiedFiles claims work was done
Third root-cause fix in the FN-5475 sweep. When `aiMergeTask` /
`recoverNoOpReviewTasks` classified a task as `proven-no-op` or
`no-changes-finalized`, both call sites moved the task to Done while
clearing `modifiedFiles: []` — silently destroying the audit trail when the
work product was uncommitted in the worktree, squashed against the wrong
branch, or dropped by reuse-handoff churn. This was the load-bearing site
of the FN-5490 / FN-5517 / FN-5526 / FN-5540 lost-work patterns.

Both call sites now check `task.modifiedFiles.length` before finalizing as
no-op. If the task claims work was done but no commit landed, the task is
moved back to `todo` with progress preserved and a new
`task:finalize-lost-work-blocked` audit event is emitted. The next
executor run re-attempts the work; the operator sees the audit event in
the timeline.

The post-hoc `reconcileDoneTaskIntegrity` path is intentionally NOT gated
— it cleans up already-Done tasks (legacy state) and is out-of-scope for
prevention. 9 lost-work tasks already in this state at sweep time are
cataloged in docs/incidents/2026-05-23-lost-work-tasks.md for fresh
re-spec.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-23 17:42:21 -07:00
gsxdsm
408e20bdc6 fix(merger): prevent tasks landing in Done with no commit on main
Two root-cause fixes for the "fake done" patterns surfaced while debugging
FN-5475's stuck preflight (it depended on FN-5233, which the board reported
as Done but whose squash had stranded on a sibling fusion/fn-* branch).

1. resolveTaskMergeTarget rejects fusion/fn-* sibling branches as a merge
   destination — when a task's baseBranch was inherited from a sibling/dependent
   dispatch, the merger detached onto and squashed against that branch instead
   of advancing main. New audit event surfaces the steering miss so the
   underlying baseBranch-propagation bug stays observable.

2. self-healing findLandedTaskCommit verifies ownership against each grep
   candidate's body before attribution. The previous code blindly accepted the
   first hit of `git log --grep=FN-XXXX` (which matches the entire commit
   message); FN-5441 and FN-5446 were both marked done against an unrelated
   FN-5483 commit whose body merely mentioned them in prose. commitOwnedByTask
   is also tightened: trailers must be line-anchored and the subject fallback
   must match conventional-commit form, not a bare substring.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-23 17:16:45 -07:00
gsxdsm
e5357a4afd feat(FN-5359): add push-to-origin button and hook to merge advance notice
Adds a push-to-origin workflow to the merge notice system, introducing a new `useMergeAdvanceNotice` hook, a `merge-advance-push-origin` route handler, and corresponding UI affordance in the `MergeAdvanceNotice` banner component. The engine gains TOCTOU and refusal audit assertions, and coverage exp

Fusion-Task-Id: FN-5359

Co-authored-by: Fusion (runfusion.ai) <noreply@runfusion.ai>
Fusion-Task-Id: FN-5359
2026-05-23 06:06:51 -07:00
gsxdsm
fe58a57a7d feat(FN-5536): add retry-exhausted in-review policy convergence invariant
Adds a regression test for retry-exhausted in-review policy convergence behavior in the engine, exports `MAX_AUTO_MERGE_RETRIES` for test reuse, and includes a small fix to restore workspace build and test green in `merger.ts` and `self-healing.ts`.

Fusion-Task-Id: FN-5536

Co-authored-by: Fusion (runfusion.ai) <noreply@runfusion.ai>
Fusion-Task-Id: FN-5536
2026-05-23 04:05:25 -07:00
gsxdsm
d4ec82bf02 feat(FN-5528): add soft-delete exclusion to stale blocked-by recovery scrip
Adds `deletedAt` sweep guards to the engine's self-healing and merger to prevent recovery operations from processing soft-deleted tasks, filters deleted tasks in the `recover-stale-blocked-by` script, includes a new regression test for the deadlock-scan exclusion pattern, and updates the soft-delete

Fusion-Task-Id: FN-5528

Fusion-Task-Lineage: 5c9e45ca-49a8-47a0-a23d-6fe8e15e7e00

Co-authored-by: Fusion (runfusion.ai) <noreply@runfusion.ai>
Fusion-Task-Id: FN-5528
2026-05-23 03:33:53 -07:00
Fusion (runfusion.ai)
c3890a9b43 feat(FN-5496): reconcile soft-deleted tasks with active blockers
Added soft-delete blocker recovery logic to the scheduler and self-healing systems, enabling reconciliation of stale blocker reasons when tasks are archived or restored. The changes include corresponding tests for the completion guard behavior, scheduler recovery paths, and self-healing integration,

Fusion-Task-Id: FN-5496
2026-05-22 10:58:44 -07:00
gsxdsm
ba066c88a3 feat(FN-5488): merge fusion/fn-5488 2026-05-22 10:37:21 -07:00
gsxdsm
16b18bf338 chore(dashboard): publish MobileNavBar render decision to vpdebug
Surface the live mode / modalOpen / keyboardOpen / footerVisible / view
values that MobileNavBar uses for its early-return so the ?vpdebug overlay
can show which one is hiding the bar on Android. Also dumps the
.project-content className so we can correlate with `--with-mobile-nav`.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-22 09:37:23 -07:00
Fusion (runfusion.ai)
324cdeb12b feat(FN-5448): add completed-task oscillation backstop and guard
Adds an oscillation backstop and guard mechanism for completed tasks to the self-healing system, including a dedicated 145-line test suite for completed-task oscillation behavior and a small update to the existing self-healing module.

Fusion-Task-Id: FN-5448
2026-05-22 08:57:40 -07:00
Fusion (runfusion.ai)
1bffa22ca9 feat(FN-5479): fix identity-guard merger bypass on detached HEAD and gate l
The merge delivers the FN-5483 identity-guard bypass for merger-driven commits on detached HEAD, plus Steps 2 and 6 of FN-5479 which gate the limbo counter by enqueue acceptance and document the associated invariant. It also restores the dashboard's PWA and theme-boot contract in index.html. New reg

Fusion-Task-Id: FN-5479
2026-05-22 08:31:12 -07:00
gsxdsm
2d661df870 fix(engine): harden worktree-pool branch creation and auto-reanchor foreign-only contamination
WorktreePool.prepareForTask now rejects empty/"HEAD" base values and verifies
that the worktree's HEAD actually landed at the resolved base SHA after
`git checkout --detach`. This closes the FN-5432 / FN-5255 contamination
pattern where a recycled worktree branched from a stale HEAD (reflog:
"branch: Created from HEAD") and pinned the new task's tip to the previous
occupant's commit.

SelfHealingManager.tryReanchorForeignOnlyContamination is invoked from both
PR-conflict and self-owned-branch-conflict catch sites before the
unrecoverable-pause path. When the conflicted branch carries only foreign
commits (no own work), the branch is reset to base via the existing
recoverForeignOnlyContamination flow instead of being escalated for human
adjudication.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-22 04:13:15 -07:00
Fusion (runfusion.ai)
a8715ed963 fix(FN-5335): enforce triple-proof gating for backward recovery
- Gate self-healing backward moves behind audited triple-proof predicates across reclaim paths
- Skip reclaim-pr-conflict mutations when proof checks fail and preserve no-action behavior
- Add broad unit and reliability-interaction coverage for triple-proof and cross-layer scenarios
- Document backward-move stage invariants, diagnostics, and add delivery changeset for @runfusion/fusion
2026-05-21 19:15:27 -07:00